Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Asthma_childhood_onset)
rsID Risk allele Effect size
rs2305480 G 0.278
rs6967330 A 0.231
rs6871536 C 0.157
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Asthma_childhood_onset)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.080 0.039 0.003 0.074 0.086
SOUTH 83 0.075 0.040 0.004 0.066 0.083
EAST 146 0.079 0.038 0.003 0.073 0.085
Populations
IBS 107 0.078 0.041 0.004 0.070 0.086
PIR 397 0.078 0.039 0.002 0.075 0.082
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Asthma_childhood_onset)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.893 ns 1 ns
IBS WEST 107 168 0.662 ns 1 ns
IBS SOUTH 107 83 0.565 ns 1 ns
IBS EAST 107 146 0.841 ns 1 ns
WEST SOUTH 168 83 0.303 ns 1 ns
WEST EAST 168 146 0.801 ns 1 ns
SOUTH EAST 83 146 0.425 ns 1 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Asthma_childhood_onset)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 0.050 0.960 . white 0.250 0.803 . white 0.050 0.960 . white 0.040 0.968 . white
pct75.95 0.030 0.976 . white −0.490 0.624 . white 0.030 0.976 . white −0.450 0.653 . white
pct50.75 −0.400 0.689 . white 0.460 0.646 . white −0.400 0.689 . white 0.380 0.704 . white
pct25.50 −1.340 0.180 . white −0.500 0.617 . white −1.340 0.180 . white −0.890 0.373 . white
pct25 1.450 0.147 . white 0.430 0.667 . white 1.450 0.147 . white 0.910 0.363 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference