Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Atrial_fibrillation)
rsID Risk allele Effect size
rs2220427 T 0.535
rs2106261 T 0.282
rs3853445 T 0.285
rs12044963 T 0.104
rs1049334 G 0.185
rs17461925 A 0.074
rs13219206 C 0.135
rs13385 A 0.090
rs4766566 T 0.104
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Atrial_fibrillation)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.076 0.022 0.002 0.072 0.079
SOUTH 83 0.074 0.022 0.002 0.069 0.078
EAST 146 0.076 0.021 0.002 0.073 0.080
Populations
IBS 107 0.081 0.022 0.002 0.077 0.085
PIR 397 0.076 0.022 0.001 0.073 0.078
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Atrial_fibrillation)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.0286 * 0.286 ns
IBS WEST 107 168 0.0659 ns 0.659 ns
IBS SOUTH 107 83 0.0266 * 0.266 ns
IBS EAST 107 146 0.1120 ns 1.000 ns
WEST SOUTH 168 83 0.4690 ns 1.000 ns
WEST EAST 168 146 0.8240 ns 1.000 ns
SOUTH EAST 83 146 0.3740 ns 1.000 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Atrial_fibrillation)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 −0.360 0.719 . white 0.250 0.803 . white −0.360 0.719 . white 0.040 0.968 . white
pct75.95 −0.740 0.459 . white −0.680 0.497 . white −0.740 0.459 . white −0.360 0.719 . white
pct50.75 −0.980 0.327 . white −1.340 0.180 . white −0.980 0.327 . white −2.030 0.042 *
pct25.50 0.680 0.497 . white 1.620 0.105 . white 0.680 0.497 . white 2.360 0.018 *
pct25 1.230 0.219 . white 0.310 0.757 . white 1.230 0.219 . white −0.010 0.992 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference