Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Bronchopulmonary_dysplasia)
rsID Risk allele Effect size
rs556493 A 0.301
rs9953270 C 0.288
rs17551536 G 0.386
rs71627250 T 0.501
rs349423 T 0.924
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Bronchopulmonary_dysplasia)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.064 0.036 0.003 0.058 0.069
SOUTH 83 0.065 0.038 0.004 0.056 0.073
EAST 146 0.061 0.033 0.003 0.056 0.067
Populations
IBS 107 0.066 0.038 0.004 0.059 0.074
PIR 397 0.063 0.035 0.002 0.059 0.066
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Bronchopulmonary_dysplasia)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.384 ns 1 ns
IBS WEST 107 168 0.538 ns 1 ns
IBS SOUTH 107 83 0.754 ns 1 ns
IBS EAST 107 146 0.258 ns 1 ns
WEST SOUTH 168 83 0.822 ns 1 ns
WEST EAST 168 146 0.548 ns 1 ns
SOUTH EAST 83 146 0.475 ns 1 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Bronchopulmonary_dysplasia)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 −0.240 0.810 . white −0.550 0.582 . white −0.240 0.810 . white −1.900 0.057 . white
pct75.95 0.230 0.818 . white −0.160 0.873 . white 0.230 0.818 . white −0.230 0.818 . white
pct50.75 −0.080 0.936 . white 1.260 0.208 . white −0.080 0.936 . white 1.310 0.190 . white
pct25.50 −1.540 0.124 . white −1.300 0.194 . white −1.540 0.124 . white −1.680 0.093 . white
pct25 1.460 0.144 . white 0.390 0.697 . white 1.460 0.144 . white 1.200 0.230 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference