Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Calcific_aortic_valve_stenosis)
rsID Risk allele Effect size
rs6702619 TRUE 0.247
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Calcific_aortic_valve_stenosis)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.126 0.088 0.007 0.113 0.140
SOUTH 83 0.140 0.090 0.010 0.120 0.160
EAST 146 0.123 0.086 0.007 0.109 0.138
Populations
IBS 107 0.135 0.084 0.008 0.119 0.151
PIR 397 0.128 0.087 0.004 0.120 0.137
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Calcific_aortic_valve_stenosis)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.468 ns 1 ns
IBS WEST 107 168 0.424 ns 1 ns
IBS SOUTH 107 83 0.705 ns 1 ns
IBS EAST 107 146 0.298 ns 1 ns
WEST SOUTH 168 83 0.250 ns 1 ns
WEST EAST 168 146 0.765 ns 1 ns
SOUTH EAST 83 146 0.172 ns 1 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Calcific_aortic_valve_stenosis)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white
pct75.95 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white
pct50.75 0.850 0.395 . white −0.340 0.734 . white 0.850 0.395 . white −0.730 0.465 . white
pct25.50 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white
pct25 −0.850 0.395 . white 0.340 0.734 . white −0.850 0.395 . white 0.730 0.465 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference