Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Cervical_cancer)
rsID Risk allele Effect size
rs9349379 A 0.262
rs6820391 A 0.215
rs12402265 A 0.207
rs11172113 T 0.199
rs6741522 A 0.231
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Cervical_cancer)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 103 0.086 0.028 0.003 0.081 0.092
SOUTH 45 0.089 0.036 0.005 0.078 0.099
EAST 57 0.086 0.036 0.005 0.077 0.096
Populations
IBS 53 0.086 0.030 0.004 0.078 0.095
PIR 205 0.087 0.032 0.002 0.082 0.091
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Cervical_cancer)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 53 205 0.947 ns 1 ns
IBS WEST 53 103 0.975 ns 1 ns
IBS SOUTH 53 45 0.742 ns 1 ns
IBS EAST 53 57 0.975 ns 1 ns
WEST SOUTH 103 45 0.686 ns 1 ns
WEST EAST 103 57 0.997 ns 1 ns
SOUTH EAST 45 57 0.715 ns 1 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Cervical_cancer)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 1.190 0.234 . white 0.910 0.363 . white 1.190 0.234 . white 1.290 0.197 . white
pct75.95 −0.630 0.529 . white −2.150 0.032 * −0.630 0.529 . white −1.800 0.072 . white
pct50.75 1.920 0.055 . white 2.330 0.020 * 1.920 0.055 . white 1.090 0.276 . white
pct25.50 −1.800 0.072 . white −0.150 0.881 . white −1.800 0.072 . white −0.660 0.509 . white
pct25 0.030 0.976 . white −0.570 0.569 . white 0.030 0.976 . white 0.790 0.430 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference