Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Chronic_hepatitis_B_infection)
rsID Risk allele Effect size
rs9277535 A 0.419
rs12614 T 0.637
rs2856718 C 0.247
rs378352 A 0.231
rs2853953 A 0.385
rs422951 C 0.239
rs1419881 G 0.113
rs652888 G 0.131
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Chronic_hepatitis_B_infection)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.103 0.038 0.003 0.097 0.109
SOUTH 83 0.099 0.030 0.003 0.092 0.105
EAST 146 0.111 0.037 0.003 0.105 0.117
Populations
IBS 107 0.105 0.037 0.004 0.098 0.112
PIR 397 0.105 0.036 0.002 0.101 0.109
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Chronic_hepatitis_B_infection)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.9290 ns 1.000 ns
IBS WEST 107 168 0.6880 ns 1.000 ns
IBS SOUTH 107 83 0.2830 ns 1.000 ns
IBS EAST 107 146 0.1750 ns 1.000 ns
WEST SOUTH 168 83 0.4240 ns 1.000 ns
WEST EAST 168 146 0.0498 * 0.498 ns
SOUTH EAST 83 146 0.0167 * 0.167 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Chronic_hepatitis_B_infection)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 −0.170 0.865 . white 1.200 0.230 . white −0.170 0.865 . white 1.630 0.103 . white
pct75.95 −1.680 0.093 . white −1.290 0.197 . white −1.680 0.093 . white −0.450 0.653 . white
pct50.75 0.620 0.535 . white 0.100 0.920 . white 0.620 0.535 . white 0.710 0.478 . white
pct25.50 0.310 0.757 . white −0.900 0.368 . white 0.310 0.757 . white −0.360 0.719 . white
pct25 0.680 0.497 . white 1.370 0.171 . white 0.680 0.497 . white −0.810 0.418 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference