Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Corneal_astigmatism)
rsID Risk allele Effect size
rs7673984 T 0.113
rs34751092 A 0.086
rs630203 G 0.083
rs75607298 A 0.131
rs753992 G 0.094
rs62401199 T 0.140
rs9939114 G 0.616
rs62128379 T 0.122
rs11775037 A 0.095
rs859362 T 0.095
rs7036824 C 0.186
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Corneal_astigmatism)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.094 0.008 0.001 0.093 0.096
SOUTH 83 0.096 0.008 0.001 0.095 0.098
EAST 146 0.097 0.008 0.001 0.095 0.098
Populations
IBS 107 0.096 0.009 0.001 0.094 0.098
PIR 397 0.096 0.008 0.000 0.095 0.096
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Corneal_astigmatism)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.5190 ns 1.000 ns
IBS WEST 107 168 0.0784 ns 0.784 ns
IBS SOUTH 107 83 0.8730 ns 1.000 ns
IBS EAST 107 146 0.7160 ns 1.000 ns
WEST SOUTH 168 83 0.0724 ns 0.724 ns
WEST EAST 168 146 0.0198 * 0.198 ns
SOUTH EAST 83 146 0.8680 ns 1.000 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Corneal_astigmatism)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 −1.350 0.177 . white −1.230 0.219 . white −1.350 0.177 . white −1.430 0.153 . white
pct75.95 1.970 0.049 * −0.220 0.826 . white 1.970 0.049 * 2.320 0.020 *
pct50.75 −0.560 0.575 . white −0.840 0.401 . white −0.560 0.575 . white −0.770 0.441 . white
pct25.50 −0.470 0.638 . white −1.320 0.187 . white −0.470 0.638 . white −1.220 0.222 . white
pct25 0.030 0.976 . white 2.790 0.005 ** 0.030 0.976 . white 0.590 0.555 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference