Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Diffuse_large_B_cell_lymphoma)
rsID Risk allele Effect size
rs13255292 T 0.199
rs4733601 A 0.174
rs79480871 T 0.293
rs2681416 A 0.148
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Diffuse_large_B_cell_lymphoma)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.060 0.030 0.002 0.055 0.064
SOUTH 83 0.062 0.029 0.003 0.056 0.069
EAST 146 0.059 0.030 0.002 0.054 0.064
Populations
IBS 107 0.063 0.030 0.003 0.057 0.068
PIR 397 0.060 0.030 0.002 0.057 0.063
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Diffuse_large_B_cell_lymphoma)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.391 ns 1 ns
IBS WEST 107 168 0.415 ns 1 ns
IBS SOUTH 107 83 0.920 ns 1 ns
IBS EAST 107 146 0.308 ns 1 ns
WEST SOUTH 168 83 0.520 ns 1 ns
WEST EAST 168 146 0.798 ns 1 ns
SOUTH EAST 83 146 0.402 ns 1 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Diffuse_large_B_cell_lymphoma)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 −1.080 0.280 . white 0.410 0.682 . white −1.080 0.280 . white 0.640 0.522 . white
pct75.95 0.460 0.646 . white −1.190 0.234 . white 0.460 0.646 . white −1.500 0.134 . white
pct50.75 −0.520 0.603 . white 0.110 0.912 . white −0.520 0.603 . white −1.460 0.144 . white
pct25.50 0.810 0.418 . white 0.780 0.435 . white 0.810 0.418 . white 1.770 0.077 . white
pct25 −0.330 0.741 . white 0.000 1.000 . white −0.330 0.741 . white 0.570 0.569 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference