Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Dupuytren-s_disease)
rsID Risk allele Effect size
rs16879765 T 0.630
rs2598107 T 0.390
rs629535 T 0.305
rs7291412 T 0.253
rs12342106 A 0.255
rs1042704 A 0.230
rs6102095 A 0.290
rs11672517 A 0.293
rs10866846 A 0.174
rs7524102 G 0.301
rs6016142 T 0.245
rs2306022 T 0.243
rs1509406 G 0.152
rs7071275 T 0.140
rs7866181 T 0.107
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Dupuytren-s_disease)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.057 0.021 0.002 0.054 0.060
SOUTH 83 0.056 0.021 0.002 0.051 0.060
EAST 146 0.056 0.020 0.002 0.053 0.059
Populations
IBS 107 0.056 0.018 0.002 0.053 0.060
PIR 397 0.056 0.020 0.001 0.054 0.058
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Dupuytren-s_disease)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.977 ns 1 ns
IBS WEST 107 168 0.777 ns 1 ns
IBS SOUTH 107 83 0.777 ns 1 ns
IBS EAST 107 146 0.843 ns 1 ns
WEST SOUTH 168 83 0.569 ns 1 ns
WEST EAST 168 146 0.594 ns 1 ns
SOUTH EAST 83 146 0.907 ns 1 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Dupuytren-s_disease)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 0.410 0.682 . white 0.460 0.646 . white 0.410 0.682 . white −0.220 0.826 . white
pct75.95 −0.640 0.522 . white 0.050 0.960 . white −0.640 0.522 . white −0.140 0.889 . white
pct50.75 0.200 0.841 . white −0.040 0.968 . white 0.200 0.841 . white −0.490 0.624 . white
pct25.50 −0.890 0.373 . white −1.830 0.067 . white −0.890 0.373 . white −0.200 0.841 . white
pct25 1.120 0.263 . white 1.560 0.119 . white 1.120 0.263 . white 0.950 0.342 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference