Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Gout)
rsID Risk allele Effect size
rs3114020 C 0.637
rs4766566 T 0.412
rs1165176 G 0.351
rs11758351 G 0.336
rs4073582 G 0.457
rs11733284 A 0.215
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Gout)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.167 0.057 0.004 0.159 0.176
SOUTH 83 0.156 0.055 0.006 0.144 0.168
EAST 146 0.167 0.055 0.005 0.158 0.176
Populations
IBS 107 0.161 0.059 0.006 0.149 0.172
PIR 397 0.165 0.056 0.003 0.159 0.170
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Gout)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.467 ns 1 ns
IBS WEST 107 168 0.317 ns 1 ns
IBS SOUTH 107 83 0.603 ns 1 ns
IBS EAST 107 146 0.362 ns 1 ns
WEST SOUTH 168 83 0.136 ns 1 ns
WEST EAST 168 146 0.945 ns 1 ns
SOUTH EAST 83 146 0.163 ns 1 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Gout)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 −2.370 0.018 * 0.000 1.000 . white −2.370 0.018 * −0.350 0.726 . white
pct75.95 −0.010 0.992 . white −0.190 0.849 . white −0.010 0.992 . white −0.410 0.682 . white
pct50.75 0.810 0.418 . white 0.670 0.503 . white 0.810 0.418 . white 0.950 0.342 . white
pct25.50 1.810 0.070 . white 1.710 0.087 . white 1.810 0.070 . white 2.320 0.020 *
pct25 −1.380 0.168 . white −2.050 0.040 * −1.380 0.168 . white −2.630 0.009 **
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference