Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Hepatitis_B)
rsID Risk allele Effect size
rs3077 G 0.626
rs2856718 T 0.445
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Hepatitis_B)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.191 0.139 0.011 0.169 0.212
SOUTH 83 0.171 0.138 0.015 0.141 0.201
EAST 146 0.151 0.118 0.010 0.132 0.170
Populations
IBS 107 0.172 0.127 0.012 0.148 0.197
PIR 397 0.172 0.132 0.007 0.159 0.185
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Hepatitis_B)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.99100 ns 1.0000 ns
IBS WEST 107 168 0.25300 ns 1.0000 ns
IBS SOUTH 107 83 0.95900 ns 1.0000 ns
IBS EAST 107 146 0.20400 ns 1.0000 ns
WEST SOUTH 168 83 0.26700 ns 1.0000 ns
WEST EAST 168 146 0.00752 ** 0.0752 ns
SOUTH EAST 83 146 0.26300 ns 1.0000 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Hepatitis_B)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 0.740 0.459 . white 0.410 0.682 . white 0.740 0.459 . white −0.130 0.897 . white
pct75.95 1.060 0.289 . white 2.100 0.036 * 1.060 0.289 . white −0.350 0.726 . white
pct50.75 −2.010 0.044 * −0.890 0.373 . white −2.010 0.044 * −1.820 0.069 . white
pct25.50 −0.020 0.984 . white −0.530 0.596 . white −0.020 0.984 . white −0.120 0.904 . white
pct25 0.910 0.363 . white −0.370 0.711 . white 0.910 0.363 . white 1.920 0.055 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference