Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Hepatitis_B_viral_clearance)
rsID Risk allele Effect size
rs3077 G 0.513
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Hepatitis_B_viral_clearance)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.139 0.153 0.012 0.116 0.162
SOUTH 83 0.127 0.162 0.018 0.091 0.162
EAST 146 0.104 0.146 0.012 0.080 0.128
Populations
IBS 107 0.127 0.147 0.014 0.099 0.155
PIR 397 0.123 0.153 0.008 0.108 0.139
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Hepatitis_B_viral_clearance)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.8260 ns 1.000 ns
IBS WEST 107 168 0.5280 ns 1.000 ns
IBS SOUTH 107 83 0.9880 ns 1.000 ns
IBS EAST 107 146 0.2270 ns 1.000 ns
WEST SOUTH 168 83 0.5490 ns 1.000 ns
WEST EAST 168 146 0.0408 * 0.408 ns
SOUTH EAST 83 146 0.2710 ns 1.000 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Hepatitis_B_viral_clearance)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 1.070 0.285 . white 0.620 0.535 . white 1.070 0.285 . white 0.150 0.881 . white
pct75.95 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white
pct50.75 −1.000 0.317 . white 0.230 0.818 . white −1.000 0.317 . white −1.610 0.107 . white
pct25.50 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white
pct25 0.500 0.617 . white −0.490 0.624 . white 0.500 0.617 . white 1.520 0.129 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference