Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Intracranial_aneurysm)
rsID Risk allele Effect size
rs9298506 A 0.247
rs12413409 G 0.255
rs9315204 T 0.182
rs1504749 C 0.157
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Intracranial_aneurysm)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.131 0.029 0.002 0.127 0.136
SOUTH 83 0.130 0.028 0.003 0.124 0.136
EAST 146 0.130 0.027 0.002 0.125 0.134
Populations
IBS 107 0.123 0.025 0.002 0.118 0.128
PIR 397 0.131 0.028 0.001 0.128 0.133
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Intracranial_aneurysm)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.00894 ** 0.0894 ns
IBS WEST 107 168 0.01080 * 0.1080 ns
IBS SOUTH 107 83 0.05910 ns 0.5910 ns
IBS EAST 107 146 0.04500 * 0.4500 ns
WEST SOUTH 168 83 0.76900 ns 1.0000 ns
WEST EAST 168 146 0.59400 ns 1.0000 ns
SOUTH EAST 83 146 0.87900 ns 1.0000 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Intracranial_aneurysm)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 2.280 0.023 * 1.910 0.056 . white 2.280 0.023 * 0.710 0.478 . white
pct75.95 0.790 0.430 . white 1.590 0.112 . white 0.790 0.430 . white 0.690 0.490 . white
pct50.75 −0.560 0.575 . white 0.140 0.889 . white −0.560 0.575 . white 1.110 0.267 . white
pct25.50 0.460 0.646 . white 0.480 0.631 . white 0.460 0.646 . white 0.530 0.596 . white
pct25 −1.270 0.204 . white −2.490 0.013 * −1.270 0.204 . white −2.280 0.023 *
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference