Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Mortality_in_heart_failure)
rsID Risk allele Effect size
rs12638540 G 0.425
rs2125623 C 0.207
rs4528684 T 0.351
rs7965445 A 0.262
rs4979906 G 0.207
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Mortality_in_heart_failure)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.050 0.024 0.002 0.046 0.054
SOUTH 83 0.054 0.024 0.003 0.048 0.059
EAST 146 0.051 0.028 0.002 0.047 0.056
Populations
IBS 107 0.053 0.028 0.003 0.048 0.059
PIR 397 0.051 0.026 0.001 0.049 0.054
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Mortality_in_heart_failure)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.506 ns 1 ns
IBS WEST 107 168 0.348 ns 1 ns
IBS SOUTH 107 83 0.878 ns 1 ns
IBS EAST 107 146 0.550 ns 1 ns
WEST SOUTH 168 83 0.301 ns 1 ns
WEST EAST 168 146 0.724 ns 1 ns
SOUTH EAST 83 146 0.473 ns 1 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Mortality_in_heart_failure)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 −0.640 0.522 . white −0.550 0.582 . white −0.640 0.522 . white −0.290 0.772 . white
pct75.95 −0.330 0.741 . white −1.410 0.159 . white −0.330 0.741 . white −0.470 0.638 . white
pct50.75 1.560 0.119 . white 0.810 0.418 . white 1.560 0.119 . white 0.780 0.435 . white
pct25.50 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white
pct25 −0.860 0.390 . white 0.530 0.596 . white −0.860 0.390 . white −0.190 0.849 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference