Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Multiple_myeloma)
rsID Risk allele Effect size
rs6599175 C 0.392
rs139371 T 0.315
rs2235544 A 0.262
rs2302777 A 0.270
rs11157317 T 0.255
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Multiple_myeloma)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.124 0.041 0.003 0.118 0.130
SOUTH 83 0.110 0.043 0.005 0.101 0.120
EAST 146 0.125 0.046 0.004 0.117 0.132
Populations
IBS 107 0.122 0.040 0.004 0.114 0.129
PIR 397 0.121 0.044 0.002 0.117 0.126
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Multiple_myeloma)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.9350 ns 1.000 ns
IBS WEST 107 168 0.7000 ns 1.000 ns
IBS SOUTH 107 83 0.0679 ns 0.679 ns
IBS EAST 107 146 0.5660 ns 1.000 ns
WEST SOUTH 168 83 0.0191 * 0.191 ns
WEST EAST 168 146 0.8210 ns 1.000 ns
SOUTH EAST 83 146 0.0134 * 0.134 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Multiple_myeloma)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 −0.040 0.968 . white 0.620 0.535 . white −0.040 0.968 . white 0.860 0.390 . white
pct75.95 −1.320 0.187 . white 0.170 0.865 . white −1.320 0.187 . white 0.260 0.795 . white
pct50.75 −1.180 0.238 . white −0.160 0.873 . white −1.180 0.238 . white 0.500 0.617 . white
pct25.50 0.750 0.453 . white 0.610 0.542 . white 0.750 0.453 . white −1.150 0.250 . white
pct25 1.460 0.144 . white −0.970 0.332 . white 1.460 0.144 . white −0.100 0.920 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference