Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Myocardial_infarction)
rsID Risk allele Effect size
rs9349379 G 0.131
rs10455872 G 0.285
rs7528419 A 0.113
rs1332329 C 0.077
rs28451064 A 0.131
rs9970807 C 0.122
rs2681472 G 0.077
rs2505083 C 0.058
rs72689147 G 0.068
rs55791371 A 0.104
rs1544935 T 0.077
rs56131196 A 0.086
rs11556924 C 0.077
rs55940034 G 0.068
rs1004467 A 0.077
rs11206510 T 0.077
rs16986953 A 0.086
rs9914266 C 0.049
rs35895680 C 0.058
rs7212798 C 0.077
rs17678683 G 0.095
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Myocardial_infarction)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.041 0.006 0.000 0.040 0.042
SOUTH 83 0.040 0.006 0.001 0.039 0.042
EAST 146 0.042 0.005 0.000 0.041 0.042
Populations
IBS 107 0.041 0.006 0.001 0.040 0.042
PIR 397 0.041 0.006 0.000 0.040 0.042
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Myocardial_infarction)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.618 ns 1 ns
IBS WEST 107 168 0.887 ns 1 ns
IBS SOUTH 107 83 0.720 ns 1 ns
IBS EAST 107 146 0.216 ns 1 ns
WEST SOUTH 168 83 0.601 ns 1 ns
WEST EAST 168 146 0.216 ns 1 ns
SOUTH EAST 83 146 0.127 ns 1 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Myocardial_infarction)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 1.660 0.097 . white 0.620 0.535 . white 1.660 0.097 . white −0.130 0.897 . white
pct75.95 −2.190 0.029 * −0.750 0.453 . white −2.190 0.029 * 0.830 0.407 . white
pct50.75 0.160 0.873 . white 0.130 0.897 . white 0.160 0.873 . white 0.310 0.757 . white
pct25.50 0.120 0.904 . white 0.850 0.395 . white 0.120 0.904 . white −0.010 0.992 . white
pct25 0.640 0.522 . white −0.610 0.542 . white 0.640 0.522 . white −1.080 0.280 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference