Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Neuroblastoma)
rsID Risk allele Effect size
rs6939340 G 0.315
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Neuroblastoma)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.139 0.114 0.009 0.121 0.156
SOUTH 83 0.140 0.110 0.012 0.116 0.164
EAST 146 0.154 0.116 0.010 0.135 0.173
Populations
IBS 107 0.152 0.118 0.011 0.129 0.174
PIR 397 0.145 0.114 0.006 0.134 0.156
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Neuroblastoma)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.585 ns 1 ns
IBS WEST 107 168 0.364 ns 1 ns
IBS SOUTH 107 83 0.504 ns 1 ns
IBS EAST 107 146 0.856 ns 1 ns
WEST SOUTH 168 83 0.913 ns 1 ns
WEST EAST 168 146 0.232 ns 1 ns
SOUTH EAST 83 146 0.380 ns 1 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Neuroblastoma)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white
pct75.95 −1.120 0.263 . white −1.030 0.303 . white −1.120 0.263 . white −0.030 0.976 . white
pct50.75 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white
pct25.50 0.910 0.363 . white 0.410 0.682 . white 0.910 0.363 . white 0.310 0.757 . white
pct25 0.030 0.976 . white 0.490 0.624 . white 0.030 0.976 . white −0.320 0.749 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference