Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Ovarian_cancer)
rsID Risk allele Effect size
rs3814113 T 0.191
rs11782652 A 0.174
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Ovarian_cancer)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 103 0.145 0.034 0.003 0.138 0.152
SOUTH 45 0.139 0.032 0.005 0.129 0.148
EAST 57 0.139 0.036 0.005 0.129 0.148
Populations
IBS 53 0.147 0.033 0.005 0.138 0.156
PIR 205 0.142 0.034 0.002 0.137 0.147
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Ovarian_cancer)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 53 205 0.361 ns 1 ns
IBS WEST 53 103 0.783 ns 1 ns
IBS SOUTH 53 45 0.249 ns 1 ns
IBS EAST 53 57 0.213 ns 1 ns
WEST SOUTH 103 45 0.296 ns 1 ns
WEST EAST 103 57 0.247 ns 1 ns
SOUTH EAST 45 57 0.984 ns 1 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Ovarian_cancer)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white
pct75.95 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white
pct50.75 −0.410 0.682 . white 0.490 0.624 . white −0.410 0.682 . white −0.690 0.490 . white
pct25.50 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white
pct25 0.410 0.682 . white −0.490 0.624 . white 0.410 0.682 . white 0.690 0.490 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference