Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Pancreatic_cancer)
rsID Risk allele Effect size
rs11655237 T 0.231
rs9554197 T 0.131
rs17688601 C 0.128
rs9854771 G 0.117
rs1517037 C 0.139
rs6073450 A 0.104
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Pancreatic_cancer)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.067 0.017 0.001 0.064 0.070
SOUTH 83 0.068 0.017 0.002 0.064 0.071
EAST 146 0.070 0.018 0.001 0.067 0.073
Populations
IBS 107 0.066 0.017 0.002 0.063 0.069
PIR 397 0.068 0.017 0.001 0.067 0.070
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Pancreatic_cancer)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.1810 ns 1.000 ns
IBS WEST 107 168 0.5650 ns 1.000 ns
IBS SOUTH 107 83 0.5090 ns 1.000 ns
IBS EAST 107 146 0.0417 * 0.417 ns
WEST SOUTH 168 83 0.8500 ns 1.000 ns
WEST EAST 168 146 0.0965 ns 0.965 ns
SOUTH EAST 83 146 0.2360 ns 1.000 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Pancreatic_cancer)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 0.750 0.453 . white 1.440 0.150 . white 0.750 0.453 . white 1.660 0.097 . white
pct75.95 0.850 0.395 . white 0.090 0.928 . white 0.850 0.395 . white 1.500 0.134 . white
pct50.75 −1.880 0.060 . white −1.120 0.263 . white −1.880 0.060 . white −1.310 0.190 . white
pct25.50 0.570 0.569 . white 0.070 0.944 . white 0.570 0.569 . white 0.020 0.984 . white
pct25 0.240 0.810 . white 0.330 0.741 . white 0.240 0.810 . white −0.920 0.358 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference