Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Pancreatitis)
rsID Risk allele Effect size
rs12688220 T 0.326
rs379742 A 0.185
rs11988997 T 0.307
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Pancreatitis)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.042 0.050 0.004 0.034 0.049
SOUTH 83 0.032 0.047 0.005 0.021 0.042
EAST 146 0.049 0.057 0.005 0.040 0.059
Populations
IBS 107 0.030 0.044 0.004 0.022 0.039
PIR 397 0.042 0.052 0.003 0.037 0.048
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Pancreatitis)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.02900 * 0.2900 ns
IBS WEST 107 168 0.07300 ns 0.7300 ns
IBS SOUTH 107 83 0.83000 ns 1.0000 ns
IBS EAST 107 146 0.00335 ** 0.0335 *
WEST SOUTH 168 83 0.15600 ns 1.0000 ns
WEST EAST 168 146 0.17900 ns 1.0000 ns
SOUTH EAST 83 146 0.01280 * 0.1280 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Pancreatitis)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 1.660 0.097 . white 1.740 0.082 . white 1.660 0.097 . white 2.280 0.023 *
pct75.95 −0.330 0.741 . white 1.220 0.222 . white −0.330 0.741 . white 1.140 0.254 . white
pct50.75 −0.320 0.749 . white 0.150 0.881 . white −0.320 0.749 . white 0.160 0.873 . white
pct25.50 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white
pct25 −0.030 0.976 . white −1.710 0.087 . white −0.030 0.976 . white −1.950 0.051 .
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference