Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Psoriasis)
rsID Risk allele Effect size
rs7709212 T 0.223
rs17728338 A 0.432
rs4921493 T 0.231
rs842625 G 0.182
rs4795067 G 0.182
rs12564022 T 0.157
rs34394770 T 0.104
rs8128234 T 0.157
rs3730682 G 0.148
rs11922372 C 0.131
rs7352944 T 0.174
rs11795343 T 0.140
rs9304742 T 0.157
rs417065 A 0.157
rs6056869 A 0.113
rs2847500 A 0.131
rs10814247 G 0.077
rs57996174 C 0.113
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Psoriasis)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.060 0.011 0.001 0.058 0.062
SOUTH 83 0.061 0.011 0.001 0.059 0.063
EAST 146 0.063 0.015 0.001 0.060 0.065
Populations
IBS 107 0.062 0.012 0.001 0.060 0.064
PIR 397 0.061 0.013 0.001 0.060 0.062
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Psoriasis)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.4390 ns 1.000 ns
IBS WEST 107 168 0.1380 ns 1.000 ns
IBS SOUTH 107 83 0.4900 ns 1.000 ns
IBS EAST 107 146 0.7550 ns 1.000 ns
WEST SOUTH 168 83 0.5380 ns 1.000 ns
WEST EAST 168 146 0.0485 * 0.485 ns
SOUTH EAST 83 146 0.3060 ns 1.000 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Psoriasis)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 −1.360 0.174 . white −0.450 0.653 . white −1.360 0.174 . white 1.470 0.142 . white
pct75.95 0.460 0.646 . white −1.590 0.112 . white 0.460 0.646 . white −0.500 0.617 . white
pct50.75 −0.570 0.569 . white −0.040 0.968 . white −0.570 0.569 . white 0.260 0.795 . white
pct25.50 −0.610 0.542 . white −0.230 0.818 . white −0.610 0.542 . white −1.120 0.263 . white
pct25 1.310 0.190 . white 1.870 0.061 . white 1.310 0.190 . white 0.440 0.660 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference