Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Psoriatic_arthritis)
rsID Risk allele Effect size
rs13191343 TRUE 0.863
rs33980500 TRUE 0.668
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Psoriatic_arthritis)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.088 0.124 0.010 0.069 0.107
SOUTH 83 0.070 0.115 0.013 0.045 0.095
EAST 146 0.081 0.125 0.010 0.061 0.102
Populations
IBS 107 0.081 0.129 0.012 0.056 0.105
PIR 397 0.082 0.122 0.006 0.070 0.094
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Psoriatic_arthritis)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.919 ns 1 ns
IBS WEST 107 168 0.613 ns 1 ns
IBS SOUTH 107 83 0.551 ns 1 ns
IBS EAST 107 146 0.952 ns 1 ns
WEST SOUTH 168 83 0.264 ns 1 ns
WEST EAST 168 146 0.627 ns 1 ns
SOUTH EAST 83 146 0.490 ns 1 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Psoriatic_arthritis)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 −1.780 0.075 . white −0.650 0.516 . white −1.780 0.075 . white −1.220 0.222 . white
pct75.95 0.740 0.459 . white −0.350 0.726 . white 0.740 0.459 . white 1.070 0.285 . white
pct50.75 −0.180 0.857 . white 1.230 0.219 . white −0.180 0.857 . white 0.020 0.984 . white
pct25.50 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white 0.000 1.000 . white
pct25 0.380 0.704 . white −0.810 0.418 . white 0.380 0.704 . white −0.140 0.889 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference