Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Renal_gout)
rsID Risk allele Effect size
rs1871744 T 0.593
rs4766566 T 0.412
rs11733284 A 0.215
rs11758351 G 0.336
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Renal_gout)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.189 0.055 0.004 0.181 0.197
SOUTH 83 0.172 0.051 0.006 0.161 0.183
EAST 146 0.186 0.059 0.005 0.176 0.195
Populations
IBS 107 0.177 0.068 0.007 0.164 0.190
PIR 397 0.184 0.056 0.003 0.179 0.190
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Renal_gout)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.2230 ns 1.000 ns
IBS WEST 107 168 0.0814 ns 0.814 ns
IBS SOUTH 107 83 0.5530 ns 1.000 ns
IBS EAST 107 146 0.2040 ns 1.000 ns
WEST SOUTH 168 83 0.0243 * 0.243 ns
WEST EAST 168 146 0.6340 ns 1.000 ns
SOUTH EAST 83 146 0.0707 ns 0.707 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Renal_gout)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 −1.820 0.069 . white −0.200 0.841 . white −1.820 0.069 . white −0.350 0.726 . white
pct75.95 −0.830 0.407 . white −0.370 0.711 . white −0.830 0.407 . white 1.090 0.276 . white
pct50.75 0.090 0.928 . white 0.890 0.373 . white 0.090 0.928 . white −0.440 0.660 . white
pct25.50 0.230 0.818 . white 0.990 0.322 . white 0.230 0.818 . white 0.460 0.646 . white
pct25 1.010 0.312 . white −1.500 0.134 . white 1.010 0.312 . white −0.670 0.503 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference