Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Restless_legs_syndrome)
rsID Risk allele Effect size
rs113851554 T 0.652
rs12046503 C 0.128
rs35987657 A 0.105
rs10208712 A 0.094
rs365032 G 0.122
rs10952927 G 0.122
rs17636328 A 0.105
rs80319144 C 0.105
rs111652004 G 0.151
rs12450895 A 0.077
rs62535767 C 0.062
rs340561 T 0.058
rs12962305 T 0.049
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Restless_legs_syndrome)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.049 0.009 0.001 0.047 0.050
SOUTH 83 0.049 0.011 0.001 0.047 0.051
EAST 146 0.050 0.010 0.001 0.048 0.051
Populations
IBS 107 0.052 0.011 0.001 0.050 0.054
PIR 397 0.049 0.010 0.001 0.048 0.050
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Restless_legs_syndrome)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.0221 * 0.221 ns
IBS WEST 107 168 0.0243 * 0.243 ns
IBS SOUTH 107 83 0.0758 ns 0.758 ns
IBS EAST 107 146 0.0989 ns 0.989 ns
WEST SOUTH 168 83 0.8880 ns 1.000 ns
WEST EAST 168 146 0.5430 ns 1.000 ns
SOUTH EAST 83 146 0.7170 ns 1.000 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Restless_legs_syndrome)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 −0.620 0.535 . white −1.470 0.142 . white −0.620 0.535 . white −1.710 0.087 . white
pct75.95 −0.740 0.459 . white −1.320 0.187 . white −0.740 0.459 . white 0.030 0.976 . white
pct50.75 −1.060 0.289 . white −0.060 0.952 . white −1.060 0.289 . white −0.570 0.569 . white
pct25.50 −0.120 0.904 . white 0.920 0.358 . white −0.120 0.904 . white 0.660 0.509 . white
pct25 2.200 0.028 * 1.140 0.254 . white 2.200 0.028 * 0.820 0.412 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference