Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Type_I_diabetes_nephropathy)
rsID	Risk allele	Effect size
rs878889	A	0.358
rs11698685	G	0.239
rs4871297	A	0.207
rs614226	C	0.300
rs13045180	T	0.247
Effect size: LN(OR)

Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Type_I_diabetes_nephropathy)
	count	mean	sd	se	lower.ci	upper.ci
Pyrenean regions
WEST	168	0.117	0.035	0.003	0.112	0.122
SOUTH	83	0.127	0.036	0.004	0.119	0.135
EAST	146	0.124	0.040	0.003	0.117	0.130
Populations
IBS	107	0.122	0.039	0.004	0.115	0.130
PIR	397	0.122	0.037	0.002	0.118	0.125

Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Type_I_diabetes_nephropathy)
group1	group2	n1	n2	p	p.signif	p.adj	p.adj.signif
IBS	PIR	107	397	0.8180	ns	1.000	ns
IBS	WEST	107	168	0.2250	ns	1.000	ns
IBS	SOUTH	107	83	0.4220	ns	1.000	ns
IBS	EAST	107	146	0.7680	ns	1.000	ns
WEST	SOUTH	168	83	0.0465	*	0.465	ns
WEST	EAST	168	146	0.0975	ns	0.975	ns
SOUTH	EAST	83	146	0.5610	ns	1.000	ns
* p < .05, ** p < .01, *** p < .001

Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Type_I_diabetes_nephropathy)
Percentile rank	PIR				WEST				SOUTH				EAST
	adj.std.val	p.value	sig.val		adj.std.val	p.value	sig.val		adj.std.val	p.value	sig.val		adj.std.val	p.value	sig.val
pct95	−1.760	0.078	.	white	−2.300	0.021	*		−1.760	0.078	.	white	−0.690	0.490	.	white
pct75.95	1.990	0.047	*		−0.030	0.976	.	white	1.990	0.047	*		1.010	0.312	.	white
pct50.75	0.810	0.418	.	white	0.880	0.379	.	white	0.810	0.418	.	white	0.590	0.555	.	white
pct25.50	−2.160	0.031	*		−0.400	0.689	.	white	−2.160	0.031	*		−1.280	0.201	.	white
pct25	0.350	0.726	.	white	0.670	0.503	.	white	0.350	0.726	.	white	0.190	0.849	.	white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference