Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Uterine_fibroids)
rsID Risk allele Effect size
rs7913069 T 0.385
rs12484776 G 0.207
rs2280543 C 0.329
rs2172873 A 0.166
rs991964 T 0.140
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Uterine_fibroids)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 103 0.087 0.021 0.002 0.083 0.091
SOUTH 45 0.091 0.015 0.002 0.087 0.096
EAST 57 0.092 0.019 0.002 0.087 0.097
Populations
IBS 53 0.088 0.019 0.003 0.083 0.094
PIR 205 0.089 0.019 0.001 0.087 0.092
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Uterine_fibroids)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 53 205 0.6910 ns 1.000 ns
IBS WEST 53 103 0.6920 ns 1.000 ns
IBS SOUTH 53 45 0.4540 ns 1.000 ns
IBS EAST 53 57 0.2460 ns 1.000 ns
WEST SOUTH 103 45 0.2220 ns 1.000 ns
WEST EAST 103 57 0.0812 ns 0.812 ns
SOUTH EAST 45 57 0.7260 ns 1.000 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Uterine_fibroids)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 −0.440 0.660 . white 0.550 0.582 . white −0.440 0.660 . white −0.070 0.944 . white
pct75.95 −0.320 0.749 . white −0.870 0.384 . white −0.320 0.749 . white 1.300 0.194 . white
pct50.75 1.860 0.063 . white 0.360 0.719 . white 1.860 0.063 . white 0.820 0.412 . white
pct25.50 −1.070 0.285 . white −0.470 0.638 . white −1.070 0.285 . white −0.750 0.453 . white
pct25 −0.750 0.453 . white 0.270 0.787 . white −0.750 0.453 . white −1.280 0.201 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference