Table 1.- Variants (SNPs) included in the PRS calculation
(Disease/Trait: Venous_thromboembolism)
rsID Risk allele Effect size
rs4253417 C 0.239
rs2066865 A 0.215
rs78707713 T 0.270
rs4524 T 0.182
rs1799963 A 0.829
rs4602861 A 0.182
Effect size: LN(OR)
Table 2.- PRS Score distribution among populations and regions
(Disease/Trait: Venous_thromboembolism)
count mean sd se lower.ci upper.ci
Pyrenean regions
WEST 168 0.109 0.027 0.002 0.105 0.113
SOUTH 83 0.104 0.029 0.003 0.098 0.110
EAST 146 0.114 0.028 0.002 0.109 0.119
Populations
IBS 107 0.105 0.026 0.002 0.100 0.110
PIR 397 0.110 0.028 0.001 0.107 0.113
Table 3.- Pairwise t-test for PRS score among populations and regions
(Disease/Trait: Venous_thromboembolism)
group1 group2 n1 n2 p p.signif p.adj p.adj.signif
IBS PIR 107 397 0.11400 ns 1.0000 ns
IBS WEST 107 168 0.26300 ns 1.0000 ns
IBS SOUTH 107 83 0.81600 ns 1.0000 ns
IBS EAST 107 146 0.00989 ** 0.0989 ns
WEST SOUTH 168 83 0.19900 ns 1.0000 ns
WEST EAST 168 146 0.09250 ns 0.9250 ns
SOUTH EAST 83 146 0.00840 ** 0.0840 ns
* p < .05, ** p < .01, *** p < .001
Table 4.- Chi-square test comparison of percentile counts on Pyrenean regions compared to Iberian peninsula population
(Disease/Trait: Venous_thromboembolism)
Percentile rank PIR WEST SOUTH EAST
adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val adj.std.val p.value sig.val
pct95 1.660 0.097 . white 1.910 0.056 . white 1.660 0.097 . white 2.110 0.035 *
pct75.95 −1.000 0.317 . white −0.500 0.617 . white −1.000 0.317 . white 0.540 0.589 . white
pct50.75 −1.280 0.201 . white 0.180 0.857 . white −1.280 0.201 . white 0.160 0.873 . white
pct25.50 0.990 0.322 . white −0.010 0.992 . white 0.990 0.322 . white −0.180 0.857 . white
pct25 0.460 0.646 . white −0.570 0.569 . white 0.460 0.646 . white −1.380 0.168 . white
adj.std.val: Adjusted standardized residuals value; p.value: P value; sig.val: statistical significance, * p < .05, ** p < .01, *** p < .001; red dash to bottom: lower counts than reference; green dash to up: upper counts than reference